Illumina GenomeStudio Data Analysis Software
Category Cross-Omics>Biomarker Discovery/Tools
Abstract GenomeStudio Data Analysis Software allows you to visualize and analyze data generated by all of Illumina's platforms.
This advanced informatics solution supports the primary analysis of sequence-based data produced by the Genome Analyzer and microarray-based data generated by the iScan System and BeadXpress Reader.
Performance optimized tools and a user-friendly graphical interface allow you to quickly and easily convert data into meaningful results.
Flexible Informatics Solution - The GenomeStudio Software package comprises seven (7) discrete application modules that enable you to conveniently compare data from different applications to obtain a comprehensive view of the genome, gene expression, and regulation.
The software's modular nature allows new applications to be added as necessary.
GenomeStudio Software Modules --
1) DNA Sequencing Module - (see G6G Abstract Number 20371)
- a) Visualize data for single and paired-end DNA sequencing experiments.
- b) Visualize alignment of stacked reads against a reference genome.
- c) Match discovered cSNPs with dbSNPs via reports.
2) RNA Sequencing Module - (see G6G Abstract Number 20372)
- a) Visualize aligned reads to a reference sequence, splice junction sets, abundant sequence set, etc.
- b) Analyze and visualize results of counts of exons, genes and splice junctions found in sample data.
- c) Jump from table to genome viewer/chromosome browser interactively.
3) ChIP Sequencing Module - (see G6G Abstract Number 20370)
- a) Map global binding sites for DNA-associated proteins.
- b) Identify differential binding levels between experimental groups.
4) Genotyping Module - (see G6G Abstract Number 20153A)
- a) Analyze SNP and CNV data across 2.1 million markers and probes.
- b) Detect sample outliers.
5) Gene Expression Module - (see G6G Abstract Number 20002A)
- a) Analyze differentially expressed genes across different genomes.
- b) Profile miRNA expression.
- c) Combine mRNA and microRNA data in a single project.
6) Methylation Module - (see G6G Abstract Number 20373)
- a) Detect cytosine methylation at single-base resolution.
- b) Identify methylation signatures across the entire genome.
7) Protein Analysis Module -
- a) Analyze immuno-protein assays.
Data generated by Illumina's platforms can be easily exported to a number of third-party software tools for more secondary or tertiary analysis through the use of plug-ins integrated within the GenomeStudio module architecture.
GenomeStudio Software Highlights --
1) Integrated Analysis - Analyze data generated from all Illumina Platforms - the Genome Analyzer, iScan System, and BeadXpress Reader.
2) Multi-Assay Analysis - Combine data from more than one assay type in the same project; analyze data from a variety of applications using the same program.
3) Advanced Framework - Display data output in tabular form; quickly and easily visualize your results using the Illumina Genome Viewer (IGV) and Illumina Chromosome Browser (ICB) graphical tools.
4) Sophisticated Analysis Platform - Access high-performance algorithms and statistics calculations that support a wide range of applications.
5) Open Access - Export data into a variety of formats compatible with other commercially available analysis tools.
6) Flexible - Add plug-ins as new features become available.
System Requirements
Genome Studio Software: click on "System Requirements"
Manufacturer
- Illumina, Inc.
- 9885 Towne Centre Drive
- San Diego, CA 92121-1975
- USA
- tel 1.858.202.4566
- fax 1.858.202.4545
- info@illumina.com
- Complete contact page
Manufacturer Web Site Illumina GenomeStudio Data Analysis Software
Price Contact manufacturer.
G6G Abstract Number 20374
G6G Manufacturer Number 101345