Agent-Based Modeling/Simulation/Tools

Abstracts by Bio Application > Cross-Omics > Agent-Based Modeling/Simulation/Tools

Each product name listed below links to a product abstract.

AgentCell

ALC (Automated Layer Construction)

AnyLogic

Bayer MoBi

Bayer PK-Sim

BehaviourComposer 2.0

BioAmbient Machine (BAM)

Bio-PEPA

BIOCHAM

BioDiVinE

BioMet Toolbox

BioNetGen

C-ImmSim

CancerSim

Cell Illustrator

ChemCell

CompuCell3D

COnstraint-Based Reconstruction and Analysis (COBRA) Toolbox

DataRail

Discovery Studio

Dizzy

E-Cell System

Flux Capacitor and Flux Simulator

Framework for Evaluation of Reaction Networks (FERN)

GenoCAD

gfit

GNU MCSim

GreatSPN

GridCell

In silico Biochemical Reaction Network Analysis (IBRENA)

Infobiotics Workbench (IBW)

JigCell

JSim Modeling System

MASON

MathModelica

MCell

Meredys

MesoRD

MetaPlab Virtual Laboratory

Möbius

Model-Checking Kit

Multi-Agent Simulation Suite (MASS)

NetLogo

NRCAM Virtual Cell

OptFlux

P System Modelling Framework

P-Lingua

PathwayOracle Toolkit

Platform Independent Petri net Editor (PIPE)

Programming Environment based on Petri Nets (PEP)

Push 3.0 Programming Language

PySCeS (the Python Simulator for Cellular Systems)

Repast Simphony

SeSAm

SHARPE

Simulation in Python (SimPy)

SmartCell

Smoldyn

Snoopy

SQUAD

Stochastic Pi Machine (SPiM)

Stochastic Simulation Kit (StochKit)

StochSim

Swarm

SYCAMORE

Synthetic Biology Software Suite (SynBioSS)

Systems Biology Workbench (SBW)

TABASCO

Timed Net Evaluation Tool (TimeNET)

VANESA

Vensim

Visual Integration for Bayesian Evaluation (VIBE) 2.0

WebCell

xCellerator

Xholon