Pathway Analysis/Gene Regulatory Networks/Tools

Abstracts by Bio Application > Cross-Omics > Pathway Analysis/Gene Regulatory Networks/Tools

Each product name listed below links to a product abstract.

Agilent GeneSpring GX

ARACNE

Bayesian Network Finder (BNFinder)

Beta Workbench (BetaWB)

Bio-PEPA

BioAmbient Machine (BAM)

BioBayes

BIOCHAM

BioDiVinE

Biolearn

Biologic Interactions and Network Analysis (BIANA)

BiologicalNetworks

BioMet Toolbox

Bionet

BioNetGen

BioTapestry

BisoGenet

ByoDyn

CADLIVE

Cell Illustrator

CellDesigner 4.0

CellML

CellML Tools

CellNetAnalyzer (CNA)

CellNetOptimizer (CNO)

Cerebral

CFinder

ChemCell

ClueGO

COPASI

CycSim

Cytoscape

DataRail

DC-ATLAS

DIANA Lab microRNA Databases and Tools

Discrete Dynamics Lab (DDLab)

Dizzy

DomainGraph

Edinburgh Pathway Editor (EPE)

ENFRN_GRN

ExPlain Analysis System

Framework for Evaluation of Reaction Networks (FERN)

GenCLiP (Genes Cluster with Literature Profiles)

Gene eXpression Network Analysis (GXNA)

GEne Network Evolution SImulation Software (GeNESiS)

Genedata Phylosopher

GenePath

GenePro

Gene REgulatory Network Decoding Evaluations tooL (GRENDEL)

GeneNetWeaver (GNW)

Genes2Networks

Genetic Network Analyzer

GenoCAD

Genomatix Pathway System (GePS)

Genowiz

GenYsisP toolbox

GINsim

GraphCrunch

GraphWeb

GridCell

In silico Biochemical Reaction Network Analysis (IBRENA)

Ingenuity Pathways Analysis (IPAŽ)

Integrated Genomics ERGO

Jarnac

JCell

KEGGanim

MARIMBA

MATISSE

Medusa

Merlin

Metabolic Pathway Builder

MetaCore

MetaReg

MetExplore

N-Browse

NetSim

Network Analysis Tools (NeAT)

Network Analysis, Visualization, & Graphing TORonto (NAViGaTOR)

NetworkAnalyzer

OptFlux

Panther Classification System

PathCase

PathVisio

Pathway Studio

Pathway Tools Cellular Overview

Pathway Tools Omics Viewer

PathwayAccess

PathwayOracle Toolkit

Pathways Integration Tool (PINT)

PIMRider

Plant MetGenMAP

Pointillist

PottersWheel

PPI Spider

Prion Disease Database (PDDB)

ProdoNet

ProMoT (Process Modeling Tool)

Protein Interaction Network Analysis (PINA)

Protein Lounge Bio-Research Tools

Qlucore Omics Explorer

R spider

RegulonDB

SABIO-RK

SBML-SAT

SBPD extension package

SimBiology 2.1.2

SimBoolNet

Snoopy

SPIKE

SQUAD

SRI Pathway Logic

SRI Pathway Tools

Studying Networks in the Omics World (SNOW)

Substructure Index-based Approximate Graph Alignment   (SAGA)

Supervised Inference of Regulatory Networks (SIRENE)

Synthetic Biology Software Suite (SynBioSS)

Synthetic Transcriptional Regulatory Networks (SynTReN)

Systems Biology Research Tool (SBRT)

Systems Biology Toolbox 2 for MATLAB

The PathOlogist

ToppCluster

TranscriptomeBrowser and InteractomeBrowser

VANESA

VANTED

VisANT