Illumina GenomeStudio Gene Expression (GX) Module

Category Genomics>Gene Expression Analysis/Profiling/Tools

Abstract The GenomeStudio Gene Expression (GX) Module supports the analysis of Direct Hybridization and DASL (cDNA-mediated Annealing, Selection, Extension, and Ligation) Assay data collected by the iScan System and BeadXpress Reader.

This module allows you to visualize differential mRNA and microRNA expression analysis as line plots, histograms, dendrograms, box plots, heat maps, scatter plots, samples tables, and gene clustering diagrams.

Simplified data management tools in GenomeStudio Software include hierarchical organization of samples, groups, group sets, and all associated project analysis.

As in all GenomeStudio modules, the GenomeStudio Framework displays data output in tabular form and enables you to quickly and easily visualize your results using the Illumina Genome Viewer (IGV) and Illumina Chromosome Browser (ICB) graphical tools.

GX Module Highlights --

1) Analyze 'differential expression' using gene-level statistical analysis tools.

2) Visualize results as line plots, histograms, dendrograms, box plots, heat maps, scatter plots, samples tables, and gene clustering diagrams.

3) Simplify data management for hierarchical organization of samples, groups, group sets, and project analysis.

4) Identify fold-level changes, perform T-test and ANalysis Of VAriance (ANOVA) and compare results across different sample group sets.

5) Combine and merge gene expression data with DNA methylation and miRNA profiling data within the same project.

6) Export whole-genome expression and genotyping data to various third party tools for expression Quantitative Trait Locus (eQTL) analysis.

System Requirements

Contact manufacturer.

Manufacturer

Manufacturer Web Site Illumina, Inc.

Price Contact manufacturer.

G6G Abstract Number 20002A

G6G Manufacturer Number 101345